Ting Xu

Data Scientist @ Konica Minolta Laboratory USA

ABOUT

I obtained my PhD in Computer Vision from Lehigh University in September 2016. I worked with Prof. Xiaolei Huang and Prof. Dimitrios Vavylonis on segmentation, quantification and tracking of multidimensional dynamic biopolymer networks. I am the main designer and developer of Project SOAX.

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EDUCATION

Ph.D. in Computer Engineering
Lehigh University
Advisor: Prof. Xiaolei Huang, Ph.D. and Prof. Dimitrios Vavylonis, Ph.D.
Dissertation: Model-based curvilinear network extraction and tracking toward quantitative analysis of biopolymer networks

September 2016

M.S. in Biomedical Engineering
University of Science and Technology of China

July 2009

B.S. in Electrical Engineering
University of Science and Technology of China

July 2005


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MAIN PROJECT

SOAX

An open source software extracting the geometry and topology of multidimensional curvilinear networks commonly found in biomedical images. For more information, please see SOAX website.

C++, Python, Boost, Qt, VTK, ITK, Eigen

JOURNAL PUBLICATIONS

T. Xu, D. Vavylonis, F. Tsai, G. H. Koenderink, W. Nie, E. Yusuf, I-Ju Lee, J.-Q. Wu, and X. Huang, "SOAX: A software for quantification of 3D biopolymer networks", Scientific Reports 5, article 9081, 2015.

T. Xu, D. Vavylonis, X. Huang, "3D actin network centerline extraction with multiple active contours", Medical Image Analysis, 18(2):272-84, 2014.

F. Li, T. Xu, D. H. Nguyen, X. Huang, C. S. Chen, C. Zhou, "Label-free evaluation of angio-genic sprouting in microengineered devices using ultrahigh-resolution optical coherence microscopy", Journal of Biomedical Optics, 19(1), 016006-016006, 2014.

CONFERENCE PROCEEDINGS AND ABSTRACTS

T. Xu, F. Li, D. H. Nguyen, C. S. Chen, C. Zhou, X. Huang. "Delineating 3D angiogenic sprouting in OCT images via multiple active contours", MICCAI-MIAR, LNCS 8090, 231–240, 2013.

T. Xu, H. Li, T. Shen, N. Ojkic, D. Vavylonis, X. Huang. "Extraction and analysis of actin networks based on open active contour models", Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, 1334–1340, 2011.

T. Xu, H. Li, T. Shen, D. Vavylonis, X. Huang. "Extraction and analysis of 3D cytoskeletal networks based on open active contour models", Molecular Biology of the Cell 22, Abstract 237, 2011.

CONTACT

xuting DOT bme AT gmail DOT com

SOCIAL LINKS

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